Affiner les résultats

The neXtProt peptide uniqueness checker: a tool for the proteomics community

Schaeffer, Mathieu ; Gateau, Alain ; Teixeira, Daniel ; Michel, Pierre-André ; Zahn-Zabal, Monique ; Lane, Lydie ; Hancock, John ; Hancock, John

In: Bioinformatics, 2017, vol. 33, no. 21, p. 3471-3472

Automatic module selection from several microarray gene expression studies

Zollinger, Alix ; Zollinger, Alix ; Davison, Anthony C. ; Goldstein, Darlene R.

In: Biostatistics, 2018, vol. 19, no. 2, p. 153-168

Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopes

Alocci, Davide ; Ghraichy, Marie ; Barletta, Elena ; Gastaldello, Alessandra ; Mariethoz, Julien ; Lisacek, Frederique

In: Glycobiology, 2018, vol. 28, no. 6, p. 349-362

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis

Singer, Jochen ; Ruscheweyh, Hans-Joachim ; Hofmann, Ariane L. ; Thurnherr, Thomas ; Singer, Franziska ; Toussaint, Nora C. ; Ng, Charlotte K Y. ; Piscuoglio, Salvatore ; Beisel, Christian ; Christofori, Gerhard ; Dummer, Reinhard ; Hall, Michael N. ; Krek, Wilhelm ; Levesque, Mitchell P. ; Manz, Markus G. ; Moch, Holger ; Papassotiropoulos, Andreas ; Stekhoven, Daniel J. ; Wild, Peter ; Wüst, Thomas ; Rinn, Bernd ; Beerenwinkel, Niko ; Berger, Bonnie ; Berger, Bonnie

In: Bioinformatics, 2018, vol. 34, no. 1, p. 107-108

openBIS ELN-LIMS: an open-source database for academic laboratories

Barillari, Caterina ; Ottoz, Diana S. M. ; Fuentes-Serna, Juan Mariano ; Ramakrishnan, Chandrasekhar ; Rinn, Bernd ; Rudolf, Fabian

In: Bioinformatics, 2016, vol. 32, no. 4, p. 638-640

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study

Poux, Sylvain ; Arighi, Cecilia N. ; Magrane, Michele ; Bateman, Alex ; Wei, Chih-Hsuan ; Lu, Zhiyong ; Boutet, Emmanuel ; Bye-A-Jee, Hema ; Famiglietti, Maria Livia ; Roechert, Bernd ; UniProt Consortium, The ; Kelso, Janet ; Kelso, Janet

In: Bioinformatics, 2017, vol. 33, no. 21, p. 3454-3460

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis

Matias Rodrigues, João F. ; Schmidt, Thomas S B. ; Tackmann, Janko ; von Mering, Christian ; Birol, Inanc ; Birol, Inanc

In: Bioinformatics, 2017, vol. 33, no. 23, p. 3808-3810

Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids

Dorier, Julien ; Goundaroulis, Dimos ; Benedetti, Fabrizio ; Stasiak, Andrzej ; Valencia, Alfonso ; Valencia, Alfonso

In: Bioinformatics, 2018, vol. 34, no. 19, p. 3402-3404

NGS-based S. aureus typing and outbreak analysis in clinical microbiology laboratories : Lessons learned from a Swiss-wide proficiency test

Dylus, David ; Pillonel, Trestan ; Opota, Onya ; Wüthrich, Daniel ; Seth-Smith, Helena M. B. ; Egli, Adrian ; Leo, Stefano ; Lazarevic, Vladimir ; Schrenzel, Jacques ; Laurent, Sacha ; Bertelli, Claire ; Blanc, Dominique S. ; Neuenschwander, Stefan ; Ramette, Alban ; Falquet, Laurent ; Imkamp, Frank ; Keller, Peter M. ; Kahles, Andre ; Oberhaensli, Simone ; Barbié, Valérie ; Dessimoz, Christophe ; Greub, Gilbert ; Lebrand, Aitana

In: Frontiers in Microbiology, 2020, vol. 11, p. 591093

Whole genome sequencing (WGS) enables high resolution typing of bacteria up to the single nucleotide polymorphism (SNP) level. WGS is used in clinical microbiology laboratories for infection control, molecular surveillance and outbreak analyses. Given the large palette of WGS reagents and bioinformatics tools, the Swiss clinical bacteriology community decided to conduct a ring trial (RT) to...

Role of ETS1 in the transcriptional network of diffuse large B cell lymphoma of the activated B cell-like type

Priebe, Valdemar ; Sartori, Giulio ; Napoli, Sara ; Chung, Elaine Yee Lin ; Cascione, Luciano ; Kwee, Ivo ; Arribas, Alberto Jesus ; Mensah, Afua Adjeiwaa ; Rinaldi, Andrea ; Ponzoni, Maurilio ; Zucca, Emanuele ; Rossi, Davide ; Efremov, Dimitar ; Lenz, Georg ; Thome, Margot ; Bertoni, Francesco

In: Cancers, 2020, vol. 12, no. 7, p. 17 p

Diffuse large B cell lymphoma (DLBCL) is a heterogenous disease that has been distinguished into at least two major molecular entities, the germinal center-like B cell (GCB) DLBCL and activated-like B cell (ABC) DLBCL, based on transcriptome expression profiling. A recurrent ch11q24.3 gain is observed in roughly a fourth of DLBCL cases resulting in the overexpression of two ETS transcription...