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Université de Fribourg

Nephronophthisis gene products display RNA-binding properties and are recruited to stress granules

Mallarino, Luisa Estrada ; Engel, Christina ; Ilık, İbrahim Avşar ; Maticzka, Daniel ; Heyl, Florian ; Müller, Barbara ; Yakulov, Toma A. ; Dengjel, Jörn ; Backofen, Rolf ; Akhtar, Asifa ; Walz, Gerd

In: Scientific Reports, 2020, vol. 10, no. 1, p. 15954

Mutations of cilia-associated molecules cause multiple developmental defects that are collectively termed ciliopathies. However, several ciliary proteins, involved in gating access to the cilium, also assume localizations at other cellular sites including the nucleus, where they participate in DNA damage responses to maintain tissue integrity. Molecular insight into how these molecules...

Université de Fribourg

The Pseudomonas aeruginosa lectin LecB causes integrin internalization and inhibits epithelial wound healing

Thuenauer, Roland ; Landi, Alessia ; Trefzer, Anne ; Altmann, Silke ; Wehrum, Sarah ; Eierhoff, Thorsten ; Diedrich, Britta ; Dengjel, Jörn ; Nyström, Alexander ; Imberty, Anne ; Römer, Winfried

In: mBio, 2020, vol. 11, no. 2, p. -

The opportunistic bacterium Pseudomonas aeruginosa produces the fucose- specific lectin LecB, which has been identified as a virulence factor. LecB has a tetrameric structure with four opposing binding sites and has been shown to act as a cross-linker. Here, we demonstrate that LecB strongly binds to the glycosylated moieties of β1-integrins on the basolateral plasma membrane of epithelial...

Université de Fribourg

Secretome of adipose-derived mesenchymal stem cells promotes skeletal muscle regeneration through synergistic action of extracellular vesicle cargo and soluble proteins

Mitchell, Robert ; Mellows, Ben ; Sheard, Jonathan ; Antonioli, Manuela ; Kretz, Oliver ; Chambers, David ; Zeuner, Marie-Theres ; Tomkins, James E. ; Denecke, Bernd ; Musante, Luca ; Joch, Barbara ; Debacq-Chainiaux, Florence ; Holthofer, Harry ; Ray, Steve ; Huber, Tobias B. ; Dengjel, Jörn ; De Coppi, Paolo ; Widera, Darius ; Patel, Ketan

In: Stem Cell Research & Therapy, 2019, vol. 10, no. 1, p. 116

The mechanisms underpinning the regenerative capabilities of mesenchymal stem cells (MSC) were originally thought to reside in their ability to recognise damaged tissue and to differentiate into specific cell types that would replace defective cells. However, recent work has shown that molecules produced by MSCs (secretome), particularly those packaged in extracellular vesicles (EVs), rather...

Université de Fribourg

A multi-layered quantitative in vivo expression atlas of the podocyte unravels kidney disease candidate genes

Rinschen, Markus M. ; Gödel, Markus ; Grahammer, Florian ; Zschiedrich, Stefan ; Helmstädter, Martin ; Kretz, Oliver ; Zarei, Mostafa ; Braun, Daniela A. ; Dittrich, Sebastian ; Pahmeyer, Caroline ; Schroder, Patricia ; Teetzen, Carolin ; Gee, HeonYung ; Daouk, Ghaleb ; Pohl, Martin ; Kuhn, Elisa ; Schermer, Bernhard ; Küttner, Victoria ; Boerries, Melanie ; Busch, Hauke ; Schiffer, Mario ; Bergmann, Carsten ; Krüger, Marcus ; Hildebrandt, Friedhelm ; Dengjel, Jörn ; Benzing, Thomas ; Huber, Tobias B.

In: Cell Reports, 2018, vol. 23, no. 8, p. 2495–2508

Damage to and loss of glomerular podocytes has been identified as the culprit lesion in progressive kidney diseases. Here, we combine mass spectrometry-based proteomics with mRNA sequencing, bioinformatics, and hypothesis-driven studies to provide a comprehensive and quantitative map of mammalian podocytes that identifies unanticipated signaling pathways. Comparison of the in vivo datasets...

Université de Fribourg

The architecture of the Rag GTPase signaling network

Nicastro, Raffaele ; Sardu, Alessandro ; Panchaud, Nicolas ; De Virgilio, Claudio

In: Biomolecules, 2017, vol. 7, no. 3, p. 48

The evolutionarily conserved target of rapamycin complex 1 (TORC1) couples an array of intra- and extracellular stimuli to cell growth, proliferation and metabolism, and its deregulation is associated with various human pathologies such as immunodeficiency, epilepsy, and cancer. Among the diverse stimuli impinging on TORC1, amino acids represent essential input signals, but how they control...

Université de Fribourg

Protein glutaminylation is a yeast-specific posttranslational modification of elongation factor 1A

Jank, Thomas ; Belyi, Yury ; Wirth, Christophe ; Rospert, Sabine ; Hu, Zehan ; Dengjel, Jörn ; Tzivelekidis, Tina ; Andersen, Gregers Rom ; Hunte, Carola ; Schlosser, Andreas ; Aktories, Klaus

In: Journal of Biological Chemistry, 2017, vol. 292, no. 39, p. 16014–16023

Ribosomal translation factors are fundamental for protein synthesis and highly conserved in all kingdoms of life. The essential eukaryotic elongation factor 1A (eEF1A) delivers aminoacyl tRNAs to the A-site of the translating 80S ribosome. Several studies have revealed that eEF1A is posttranslationally modified. Using MS analysis, site-directed mutagenesis, and X-ray structural data analysis of...

Université de Fribourg

The atypical kinase RIOK1 promotes tumor growth and invasive behavior

Weinberg, Florian ; Reischmann, Nadine ; Fauth, Lisa ; Taromi, Sanaz ; Mastroianni, Justin ; Köhler, Martin ; Halbach, Sebastian ; Becker, Andrea C. ; Deng, Niantao ; Schmitz, Tatjana ; Uhl, Franziska Maria ; Herbener, Nicola ; Riedel, Bianca ; Beier, Fabian ; Swarbrick, Alexander ; Lassmann, Silke ; Dengjel, Jörn ; Zeiser, Robert ; Brummer, Tilman

In: EBioMedicine, 2017, vol. 20, p. 79–97

Despite being overexpressed in different tumor entities, RIO kinases are hardly characterized in mammalian cells. We investigated the role of these atypical kinases in different cancer cells. Using isogenic colon-, breast- and lung cancer cell lines, we demonstrate that knockdown of RIOK1, but not of RIOK2 or RIOK3, strongly impairs proliferation and invasiveness in conventional and 3D...