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Testing machine learning based systems : a systematic mapping

Riccio, Vincenzo ; Jahangirova, Gunel ; Stocco, Andrea ; Humbatova, Nargiz ; Weiss, Michael ; Tonella, Paolo

In: Empirical Software Engineering, 2020, vol. 25, no. 6, p. 5193–5254

Context: A Machine Learning based System (MLS) is a software system including one or more components that learn how to perform a task from a given data set. The increasing adoption of MLSs in safety critical domains such as autonomous driving, healthcare, and finance has fostered much attention towards the quality assurance of such systems. Despite the advances in software testing, MLSs bring...

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

Gardeux, Vincent ; David, Fabrice P A. ; Shajkofci, Adrian ; Schwalie, Petra C. ; Deplancke, Bart ; Stegle, Oliver ; Stegle, Oliver

In: Bioinformatics, 2017, vol. 33, no. 19, p. 3123-3125

Automatic module selection from several microarray gene expression studies

Zollinger, Alix ; Zollinger, Alix ; Davison, Anthony C. ; Goldstein, Darlene R.

In: Biostatistics, 2018, vol. 19, no. 2, p. 153-168

State aggregation for fast likelihood computations in molecular evolution

Davydov, Iakov I. ; Robinson-Rechavi, Marc ; Salamin, Nicolas ; Valencia, Alfonso ; Valencia, Alfonso

In: Bioinformatics, 2017, vol. 33, no. 3, p. 354-362

Detection of periodic patterns in microarray data reveals novel oscillating transcripts of biological rhythms in Ciona intestinalis

Matsumae, Hiromi ; Ishiwata, Ryosuke ; Minamoto, Toshifumi ; Ishida, Norio ; Ogishima, Soichi ; Tanaka, Hiroshi

In: Artificial Life and Robotics, 2015, vol. 20, no. 4, p. 347-352

Genetic differentiation in life history traits and thermal stress performance across a heterogeneous dune landscape in Arabidopsis lyrata

Wos, Guillaume ; Willi, Yvonne

In: Annals of Botany, 2018, vol. 122, no. 3, p. 473-484

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference

Train, Clément-Marie ; Glover, Natasha M. ; Gonnet, Gaston H. ; Altenhoff, Adrian M. ; Dessimoz, Christophe

In: Bioinformatics, 2017, vol. 33, no. 14, p. i75-i82

A co-expression gene network associated with developmental regulation of apple fruit acidity

Bai, Yang ; Dougherty, Laura ; Cheng, Lailiang ; Xu, Kenong

In: Molecular Genetics and Genomics, 2015, vol. 290, no. 4, p. 1247-1263

A benchmark of gene expression tissue-specificity metrics

Kryuchkova-Mostacci, Nadezda ; Robinson-Rechavi, Marc

In: Briefings in Bioinformatics, 2017, vol. 18, no. 2, p. 205-214

Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort

Viñuela, Ana ; Brown, Andrew A. ; Buil, Alfonso ; Tsai, Pei-Chien ; Davies, Matthew N. ; Bell, Jordana T. ; Dermitzakis, Emmanouil T. ; Spector, Timothy D. ; Small, Kerrin S.

In: Human Molecular Genetics, 2018, vol. 27, no. 4, p. 732-741