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NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks

Abdellah, Marwan ; Hernando, Juan ; Eilemann, Stefan ; Lapere, Samuel ; Antille, Nicolas ; Markram, Henry ; Schürmann, Felix

In: Bioinformatics, 2018, vol. 34, no. 13, p. i574-i582

fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy

Hilsenbeck, Oliver ; Schwarzfischer, Michael ; Loeffler, Dirk ; Dimopoulos, Sotiris ; Hastreiter, Simon ; Marr, Carsten ; Theis, Fabian J. ; Schroeder, Timm ; Murphy, Robert ; Murphy, Robert

In: Bioinformatics, 2017, vol. 33, no. 13, p. 2020-2028

Label-free, three-dimensional multiphoton microscopy of the connective tissue in the anterior vaginal wall

Sikora, Michal ; Scheiner, David ; Betschart, Cornelia ; Perucchini, Daniele ; Mateos, José ; di Natale, Anthony ; Fink, Daniel ; Maake, Caroline

In: International Urogynecology Journal, 2015, vol. 26, no. 5, p. 685-691

SEEDS: Superpixels Extracted Via Energy-Driven Sampling

Van den Bergh, Michael ; Boix, Xavier ; Roig, Gemma ; Van Gool, Luc

In: International Journal of Computer Vision, 2015, vol. 111, no. 3, p. 298-314

A statistical shape model of the human second cervical vertebra

Clogenson, Marine ; Duff, John ; Luethi, Marcel ; Levivier, Marc ; Meuli, Reto ; Baur, Charles ; Henein, Simon

In: International Journal of Computer Assisted Radiology and Surgery, 2015, vol. 10, no. 7, p. 1097-1107

NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks

Jorstad, Anne ; Nigro, Biagio ; Cali, Corrado ; Wawrzyniak, Marta ; Fua, Pascal ; Knott, Graham

In: Neuroinformatics, 2015, vol. 13, no. 1, p. 83-92

The influence of substituents on gelation and stacking order of oligoaramid – based supramolecular networks

Drechsler, Susanne ; Balog, Sandor ; Kilbinger, Andreas F. M. ; Casalini, Tommaso

In: Soft Matter, 2019, vol. 15, no. 36, p. 7250–7261

Self-assembly has proven to be a powerful tool for functional, smart materials such as hydrogels derived from low molecular weight compounds. However, the targeted design of functional gelators remains difficult. Here, we present a set of four Y-shaped aromatic amide tetramers with varying functionalities able to undergo different non- covalent interactions. These compounds were explored...

ImageNet Auto-Annotation with Segmentation Propagation

Guillaumin, Matthieu ; Küttel, Daniel ; Ferrari, Vittorio

In: International Journal of Computer Vision, 2014, vol. 110, no. 3, p. 328-348

Isothermal Ageing of SnAgCu Solder Alloys: Three-Dimensional Morphometry Analysis of Microstructural Evolution and Its Effects on Mechanical Response

Maleki, Milad ; Cugnoni, Joë ; Botsis, John

In: Journal of Electronic Materials, 2014, vol. 43, no. 4, p. 1026-1042

A model based two-stage classifier for airborne particles analyzed with Computer Controlled Scanning Electron Microscopy

Meier, Mario Federico ; Mildenberger, Thoralf ; Locher, René ; Rausch, Juanita ; Zünd, Thomas ; Neururer, Christoph ; Ruckstuhl, Andreas ; Grobéty, Bernard

In: Journal of Aerosol Science, 2018, vol. 123, p. 1–16

Computer controlled scanning electron microscopy (CCSEM) is a widely-used method for single airborne particle analysis. It produces extensive chemical and morphological data sets, whose processing and interpretation can be very time consuming. We propose an automated two-stage particle classification procedure based on elemental compositions of individual particles. A rule-based classifier is...