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Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes

Matschiner, Michael ; Musilová, Zuzana ; Barth, Julia M. I. ; Starostová, Zuzana ; Salzburger, Walter ; Steel, Mike ; Bouckaert, Remco

In: Systematic Biology, 2017, vol. 66, no. 1, p. 3-22

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference

Train, Clément-Marie ; Glover, Natasha M. ; Gonnet, Gaston H. ; Altenhoff, Adrian M. ; Dessimoz, Christophe

In: Bioinformatics, 2017, vol. 33, no. 14, p. i75-i82

Habitat use and its implications to functional morphology: niche partitioning and the evolution of locomotory morphology in Lake Tanganyikan cichlids (Perciformes: Cichlidae)

Colombo, Marco ; Indermaur, Adrian ; Meyer, Britta S. ; Salzburger, Walter

In: Biological Journal of the Linnean Society, 2016, vol. 118, no. 3, p. 536-550

Comparative Genomics of Community-Associated Methicillin-Resistant Staphylococcus aureus Shows the Emergence of Clone ST8-USA300 in Geneva, Switzerland

Von Dach, Elodie ; Diene, Seydina M. ; Fankhauser, Carolina ; Schrenzel, Jacques ; Harbarth, Stephan ; François, Patrice

In: The Journal of Infectious Diseases, 2016, vol. 213, no. 9, p. 1370-1379

Gene flow and diversification in a species complex of Alcantarea inselberg bromeliads

Lexer, Christian ; Marthaler, Fabienne ; Humbert, Sarah ; Barbará, Thelma ; de la Harpe, Marylaure ; Bossolini, Eligio ; Paris, Margot ; Martinelli, Gustavo ; Versieux, Leonardo M.

In: Botanical Journal of the Linnean Society, 2016, vol. 181, no. 3, p. 505-520

Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation

De La Harpe, Marylaure ; Paris, Margot ; Hess, Jaqueline ; Barfuss, Michael Harald Johannes ; Serrano‐Serrano, Martha Liliana ; Ghatak, Arindam ; Chaturvedi, Palak ; Weckwerth, Wolfram ; Till, Walter ; Salamin, Nicolas ; Wai, Ching Man ; Ming, Ray ; Lexer, Christian

In: Plant, Cell & Environment, 2020/n/a//-

The adaptive radiation of Bromeliaceae (pineapple family) is one of the most diverse among Neotropical flowering plants. Diversification in this group was facilitated by shifts in several adaptive traits or “key innovations” including the transition from C3 to CAM photosynthesis associated with xeric (heat/drought) adaptation. We used phylogenomic approaches, complemented by differential...

Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication

Gros-Balthazard, Muriel ; Besnard, Guillaume ; Sarah, Gautier ; Holtz, Yan ; Leclercq, Julie ; Santoni, Sylvain ; Wegmann, Daniel ; Glémin, Sylvain ; Khadari, Bouchaib

In: The Plant Journal, 2019, p. tpj.14435

The olive (Olea europaea L. subsp. europaea) is one of the oldest and most socio‐ economically important cultivated perennial crop in the Mediterranean region. Yet, its origins are still under debate and the genetic bases of the phenotypic changes associated with its domestication are unknown. We generated RNA‐sequencing data for 68 wild and cultivated olive trees to study the genetic...

Whole-genome duplication in teleost fishes and its evolutionary consequences

Glasauer, Stella ; Neuhauss, Stephan

In: Molecular Genetics and Genomics, 2014, vol. 289, no. 6, p. 1045-1060

Cxcl12 evolution – subfunctionalization of a ligand through altered interaction with the chemokine receptor

Boldajipour, Bijan ; Doitsidou, Maria ; Tarbashevich, Katsiaryna ; Laguri, Cedric ; Yu, Shuizi Rachel ; Ries, Jonas ; Dumstrei, Karin ; Thelen, Sylvia ; Dörries, Julia ; Messerschmidt, Esther-Maria ; Thelen, Marcus ; Schwille, Petra ; Brand, Michael ; Lortat-Jacob, Hugues ; Raz, Erez

In: Development, 2011, vol. 138, no. 14, p. 2909-2914

The active migration of primordial germ cells (PGCs) from their site of specification towards their target is a valuable model for investigating directed cell migration within the complex environment of the developing embryo. In several vertebrates, PGC migration is guided by Cxcl12, a member of the chemokine superfamily. Interestingly, two distinct Cxcl12 paralogs are expressed in zebrafish...

A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms

de La Harpe, Marylaure ; Hess, Jaqueline ; Loiseau, Oriane ; Salamin, Nicolas ; Lexer, Christian ; Paris, Margot

In: Molecular Ecology Resources, 2019, p. -

Understanding the genetics of biological diversification across micro‐ and macro‐ evolutionary time scales is a vibrant field of research for molecular ecologists as rapid advances in sequencing technologies promise to overcome former limitations. In palms, an emblematic, economically and ecologically important plant family with high diversity in the tropics, studies of diversification at...