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MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis

Matias Rodrigues, João F. ; Schmidt, Thomas S B. ; Tackmann, Janko ; von Mering, Christian ; Birol, Inanc ; Birol, Inanc

In: Bioinformatics, 2017, vol. 33, no. 23, p. 3808-3810

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

Franceschini, Andrea ; Szklarczyk, Damian ; Frankild, Sune ; Kuhn, Michael ; Simonovic, Milan ; Roth, Alexander ; Lin, Jianyi ; Minguez, Pablo ; Bork, Peer ; von Mering, Christian ; Jensen, Lars J.

In: Nucleic Acids Research, 2013, vol. 41, no. D1, p. D808-D815

STRING 8—a global view on proteins and their functional interactions in 630 organisms

Jensen, Lars J. ; Kuhn, Michael ; Stark, Manuel ; Chaffron, Samuel ; Creevey, Chris ; Muller, Jean ; Doerks, Tobias ; Julien, Philippe ; Roth, Alexander ; Simonovic, Milan ; Bork, Peer ; von Mering, Christian

In: Nucleic Acids Research, 2009, vol. 37, p. D412-D416

eggNOG v4.0: nested orthology inference across 3686 organisms

Powell, Sean ; Forslund, Kristoffer ; Szklarczyk, Damian ; Trachana, Kalliopi ; Roth, Alexander ; Huerta-Cepas, Jaime ; Gabaldón, Toni ; Rattei, Thomas ; Creevey, Chris ; Kuhn, Michael ; Jensen, Lars J. ; von Mering, Christian ; Bork, Peer

In: Nucleic Acids Research, 2014, vol. 42, no. D1, p. D231-D239

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences

Matias Rodrigues, João F. ; von Mering, Christian

In: Bioinformatics, 2014, vol. 30, no. 2, p. 287-288

STITCH 4: integration of protein-chemical interactions with user data

Kuhn, Michael ; Szklarczyk, Damian ; Pletscher-Frankild, Sune ; Blicher, Thomas H. ; von Mering, Christian ; Jensen, Lars J. ; Bork, Peer

In: Nucleic Acids Research, 2014, vol. 42, no. D1, p. D401-D407

STITCH: interaction networks of chemicals and proteins

Kuhn, Michael ; von Mering, Christian ; Campillos, Monica ; Jensen, Lars Juhl ; Bork, Peer

In: Nucleic Acids Research, 2008, vol. 36, p. D684-D688

STITCH 3: zooming in on protein-chemical interactions

Kuhn, Michael ; Szklarczyk, Damian ; Franceschini, Andrea ; von Mering, Christian ; Jensen, Lars Juhl ; Bork, Peer

In: Nucleic Acids Research, 2012, vol. 40, no. D1, p. D876-D880

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Powell, Sean ; Szklarczyk, Damian ; Trachana, Kalliopi ; Roth, Alexander ; Kuhn, Michael ; Muller, Jean ; Arnold, Roland ; Rattei, Thomas ; Letunic, Ivica ; Doerks, Tobias ; Jensen, Lars J. ; von Mering, Christian ; Bork, Peer

In: Nucleic Acids Research, 2012, vol. 40, no. D1, p. D284-D289