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ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

Gardeux, Vincent ; David, Fabrice P A. ; Shajkofci, Adrian ; Schwalie, Petra C. ; Deplancke, Bart ; Stegle, Oliver ; Stegle, Oliver

In: Bioinformatics, 2017, vol. 33, no. 19, p. 3123-3125

Multilevel regulation of the glass locus during Drosophila eye development

Fritsch, Cornelia ; Bernardo-Garcia, F. Javier ; Humberg, Tim-Henning ; Mishra, Abhishek Kumar ; Miellet, Sara ; Almeida, Silvia ; Frochaux, Michael V. ; Deplancke, Bart ; Huber, Armin ; Sprecher, Simon G.

In: PLOS Genetics, 2019, vol. 15, no. 7, p. e1008269

Development of eye tissue is initiated by a conserved set of transcription factors termed retinal determination network (RDN). In the fruit fly Drosophila melanogaster, the zinc-finger transcription factor Glass acts directly downstream of the RDN to control identity of photoreceptor as well as non-photoreceptor cells. Tight control of spatial and temporal gene expression is a critical...

WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data

Massouras, Andreas ; Decouttere, Frederik ; Hens, Korneel ; Deplancke, Bart

In: Nucleic Acids Research, 2010, vol. 38, p. W378-W384

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data

Waszak, Sebastian M. ; Kilpinen, Helena ; Gschwind, Andreas R. ; Orioli, Andrea ; Raghav, Sunil K. ; Witwicki, Robert M. ; Migliavacca, Eugenia ; Yurovsky, Alisa ; Lappalainen, Tuuli ; Hernandez, Nouria ; Reymond, Alexandre ; Dermitzakis, Emmanouil T. ; Deplancke, Bart

In: Bioinformatics, 2014, vol. 30, no. 2, p. 165-171

iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks

Rockel, Sylvie ; Geertz, Marcel ; Hens, Korneel ; Deplancke, Bart ; Maerkl, Sebastian J.

In: Nucleic Acids Research, 2013, vol. 41, no. 4, p. e52-e52