In: Frontiers in Microbiology, 2020, vol. 11, p. 591093
Whole genome sequencing (WGS) enables high resolution typing of bacteria up to the single nucleotide polymorphism (SNP) level. WGS is used in clinical microbiology laboratories for infection control, molecular surveillance and outbreak analyses. Given the large palette of WGS reagents and bioinformatics tools, the Swiss clinical bacteriology community decided to conduct a ring trial (RT) to...
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In: Antonie van Leeuwenhoek, 2013, vol. 104, no. 4, p. 521-532
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In: Antimicrobial Agents and Chemotherapy, 2018, p. AAC.00076-18
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In: Clinical Infectious Diseases, 2015, vol. 60, no. 6, p. 924-927
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In: Frontiers in Microbiology, 2015, vol. 6, p. 101
With the widespread availability of high-throughput sequencing technologies, sequencing projects have become pervasive in the molecular life sciences. The huge bulk of data generated daily must be analyzed further by biologists with skills in bioinformatics and by “embedded bioinformaticians,” i.e., bioinformaticians integrated in wet lab research groups. Thus, students interested in...
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In: Environmental Microbiology, 2014, p. -
Pseudomonas knackmussii B13 was the first strain to be isolated in 1974 that could degrade chlorinated aromatic hydrocarbons. This discovery was the prologue for subsequent characterization of numerous bacterial metabolic pathways, for genetic and biochemical studies, and which spurred ideas for pollutant bioremediation. In this study, we determined the complete genome sequence of B13 using...
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