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ExpressionView—an interactive viewer for modules identified in gene expression data

Lüscher, Andreas ; Csárdi, Gábor ; Morton de Lachapelle, Aitana ; Kutalik, Zoltán ; Peter, Bastian ; Bergmann, Sven

In: Bioinformatics, 2010, vol. 26, no. 16, p. 2062-2063

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    Titre
    • ExpressionView—an interactive viewer for modules identified in gene expression data
    Auteur
    • Lüscher, Andreas. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    • Csárdi, Gábor. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    • Morton de Lachapelle, Aitana. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    • Kutalik, Zoltán. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    • Peter, Bastian. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    • Bergmann, Sven. Swiss Institute of Bioinformatics and Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland
    Type de document
    • Postprint
    Identifiant OAI-PMH
    • oai:doc.rero.ch:299059
    Summary
    Summary: ExpressionView is an R package that provides an interactive graphical environment to explore transcription modules identified in gene expression data. A sophisticated ordering algorithm is used to present the modules with the expression in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual modules and access biologically relevant metadata associated with them. Availability: http://www.unil.ch/cbg/ExpressionView. Screenshots, tutorials and sample data sets can be found on the ExpressionView web site. Contact: sven.bergmann@unil.ch