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MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis

Hwang, Daehee ; Zhang, Ning ; Lee, Hookeun ; Yi, Eugene ; Zhang, Hui ; Lee, Inyoul Y. ; Hood, Leroy ; Aebersold, Ruedi

In: Bioinformatics, 2008, vol. 24, no. 22, p. 2641-2642

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    Title
    • MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis
    Author
    • Hwang, Daehee. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Zhang, Ning. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Lee, Hookeun. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Yi, Eugene. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Zhang, Hui. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Lee, Inyoul Y.. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Hood, Leroy. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    • Aebersold, Ruedi. Institute for Systems Biology, Seattle, WA 98103, USA, I-BIO Program and Department of Chemical Eng., Pohang 790-784, LCDI, Gachon University of Medicine and Science, Incheon, Republic of Korea, Institute for Molecular Systems Biology, ETH, CH-8093 Zürich and Faculty of natural science, University of Zürich, Zürich, Switzerland
    Document Type
    • Postprint
    OAI-PMH Identifier
    • oai:doc.rero.ch:293260
    Summary
    Summary: MS-BID (MS Biomarker Discovery Platform) is an integrative computational pipeline for biomarker discovery using LC-MS-based comparative proteomic analysis. This platform consists of several computational tools for: (i) detecting peptides in the collected patterns; (ii) matching detected peptides across a number of LC-MS datasets and (iii) selecting discriminatory peptides between classes of samples. Availability: MS-BID source codes, binaries and documentations are freely available under LGPL from http://tools.proteomecenter.org/msBID.php. Contact: dhhwang@postech.ac.kr