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The Microbe browser for comparative genomics

Gattiker, Alexandre ; Dessimoz, Christophe ; Schneider, Adrian ; Xenarios, Ioannis ; Pagni, Marco ; Rougemont, Jacques

In: Nucleic Acids Research, 2009, vol. 37, p. W296-W299

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks

Ganter, Mathias ; Bernard, Thomas ; Moretti, Sébastien ; Stelling, Joerg ; Pagni, Marco

In: Bioinformatics, 2013, vol. 29, no. 6, p. 815-816

The PROSITE database, its status in 2002

Falquet, Laurent ; Pagni, Marco ; Bucher, Philipp ; Hulo, Nicolas ; Sigrist, Christian J. A. ; Hofmann, Kay ; Bairoch, Amos

In: Nucleic Acids Research, 2002, vol. 30, no. 1, p. 235-238

Swiss EMBnet node web server

Falquet, Laurent ; Bordoli, Lorenza ; Ioannidis, Vassilios ; Pagni, Marco ; Jongeneel, C. Victor

In: Nucleic Acids Research, 2003, vol. 31, no. 13, p. 3782-3783

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles

Schuepbach, Thierry ; Pagni, Marco ; Bridge, Alan ; Bougueleret, Lydie ; Xenarios, Ioannis ; Cerutti, Lorenzo

In: Bioinformatics, 2013, vol. 29, no. 9, p. 1215-1217

Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1

Pagni, Marco ; Niculita-Hirzel, Hélène ; Pellissier, Loïc ; Dubuis, Anne ; Xenarios, Ioannis ; Guisan, Antoine ; Sanders, Ian R. ; Goudet, Jérôme ; Guex, Nicolas

In: Bioinformatics, 2013, vol. 29, no. 10, p. 1268-1274

The salivary microbiome for differentiating individuals: proof of principle

Leake, Sarah L. ; Pagni, Marco ; Falquet, Laurent ; Taroni, Franco ; Greub, Gilbert

In: Microbes and Infection, 2016, vol. 18, no. 6, p. 399–405

Human identification has played a prominent role in forensic science for the past two decades. Identification based on unique genetic traits is driving the field. However, this may have limitations, for instance, for twins. Moreover, high-throughput sequencing techniques are now available and may provide a high amount of data likely useful in forensic science.This study investigates the...