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Consortium of Swiss Academic Libraries

Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study

Kusejko, Katharina ; Kadelka, Claus ; Marzel, Alex ; Battegay, Manuel ; Bernasconi, Enos ; Calmy, Alexandra ; Cavassini, Matthias ; Hoffmann, Matthias ; Böni, Jürg ; Yerly, Sabine ; Klimkait, Thomas ; Perreau, Matthieu ; Rauch, Andri ; Günthard, Huldrych F. ; Kouyos, Roger D. ; Scherrer, Alexandra ; Wild, Susanne ; Perraudin, Danièle ; Minichiello, Mirjam ; Anagnostopoulos, A. ; Battegay, M. ; Bernasconi, E. ; Böni, J. ; Braun, D L. ; Bucher, H C. ; Calmy, A. ; Cavassini, M. ; Ciuffi, A. ; Dollenmaier, G. ; Egger, M. ; Elzi, L. ; Fehr, J. ; Fellay, J. ; Furrer, H. ; Fux, C A. ; Günthard, H F. ; Haerry, D. ; Hasse, B. ; Hirsch, H H. ; Hoffmann, M. ; Hösli, I. ; Huber, M. ; Kahlert, C. ; Kaiser, L. ; Keiser, O. ; Klimkait, T. ; Kouyos, R D. ; Kovari, H. ; Ledergerber, B. ; Martinetti, G. ; Martinez de Tejada, B. ; Marzolini, C. ; Metzner, K J. ; Müller, N. ; Nicca, D. ; Paioni, P. ; Pantaleo, G. ; Perreau, M. ; Rauch, A. ; Rudin, C. ; Scherrer, A U. ; Schmid, P. ; Speck, R. ; Stöckle, M. ; Tarr, P. ; Trkola, A. ; Vernazza, P. ; Wandeler, G. ; Weber, R. ; Yerly, S Morover ; Scherrer, Alexandra ; Wild, Susanne ; Perraudin, Danièle ; Minichiello, Mirjam ; Anagnostopoulos, A. ; Battegay, M. ; Bernasconi, E. ; Böni, J. ; Braun, D L. ; Bucher, H C. ; Calmy, A. ; Cavassini, M. ; Ciuffi, A. ; Dollenmaier, G. ; Egger, M. ; Elzi, L. ; Fehr, J. ; Fellay, J. ; Furrer, H. ; Fux, C A. ; Günthard, H F. ; Haerry, D. ; Hasse, B. ; Hirsch, H H. ; Hoffmann, M. ; Hösli, I. ; Huber, M. ; Kahlert, C. ; Kaiser, L. ; Keiser, O. ; Klimkait, T. ; Kouyos, R D. ; Kovari, H. ; Ledergerber, B. ; Martinetti, G. ; Martinez de Tejada, B. ; Marzolini, C. ; Metzner, K J. ; Müller, N. ; Nicca, D. ; Paioni, P. ; Pantaleo, G. ; Perreau, M. ; Rauch, A. ; Rudin, C. ; Scherrer, A U. ; Schmid, P. ; Speck, R. ; Stöckle, M. ; Tarr, P. ; Trkola, A. ; Vernazza, P. ; Wandeler, G. ; Weber, R. ; Yerly, S Morover

In: Virus Evolution, 2018, vol. 4, no. 2, p. -

Consortium of Swiss Academic Libraries

Hayes, Anna Clarke, Michael: Inside Xinjiang. Space, Place and Power in China's Muslim Far Northwest

Kobi, Madlen

In: Asiatische Studien - Études Asiatiques, 2017, vol. 71, no. 3, p. 1029-1037

Université de Fribourg

New species, revision, and phylogeny of Ronzotherium Aymard, 1854 (Perissodactyla, Rhinocerotidae)

Tissier, Jérémy ; Antoine, Pierre-Olivier ; Becker, Damien

In: European Journal of Taxonomy, 2021, vol. 753, p. 1-80

Ronzotherium is one of the earliest Rhinocerotidae in Europe, which first appeared just after the Eocene/Oligocene transition (Grande Coupure), and became extinct at the end of the Oligocene. It is a large-sized rhinocerotid, with a special position in the phylogeny of this group, as being one of the earliest-branching true Rhinocerotidae. However, its intra-generic systematics has never been...

Université de Fribourg

A new glirid-like cricetid from the lower Oligocene of Southern China

Lu, Xiao-Yu ; Ni, Xijun ; Maridet, Olivier

In: Journal of Vertebrate Paleontology, 2021, p. e1917587

Here we report a new cricetid s.l., Caecocricetodon yani, gen. et sp. nov., discovered in the early Oligocene of the Caijiachong Formation in Yunnan Province, China. The new cricetid differs from all known cricetids or stem muroids by its particular molar pattern displaying numerous crests and spurs. Our phylogenetic analysis based on a matrix including 42 taxa and 72 characters indicates...

Université de Fribourg

Phylogeny, taxonomy, and biogeography of Pterocarya (Juglandaceae)

Song, Yi-Gang ; Li, Ying ; Meng, Hong-Hu ; Fragnière, Yann ; Ge, Bin-Jie ; Sakio, Hitoshi ; Yousefzadeh, Hamed ; Bétrisey, Sébastien ; Kozlowski, Gregor

In: Plants, 2020, vol. 9, no. 11, p. 1524

Relict species play an important role in understanding the biogeography of intercontinental disjunctions. Pterocarya (a relict genus) is the valuable model taxon for studying the biogeography of East Asian versus southern European/West Asian disjunct patterns. This disjunction has not been as well studied as others (e.g., between Eastern Asia and North America). Several phylogenetic studies...

Université de Fribourg

RaxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML

Edler, Daniel ; Klein, Johannes ; Antonelli, Alexandre ; Silvestro, Daniele

In: Methods in Ecology and Evolution, 2020, vol. -, no. -, p. -

raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used softwares for phylogenetic inference using maximum likelihood.Here we present raxmlGUI 2.0, a complete rewrite of the GUI which seamlessly integrates RAxML binaries for all major operating systems with an intuitive graphical front‐end to setup and run phylogenetic analyses.Our program offers automated...

Université de Fribourg

Cenozoic evolution of the steppe-desert biome in Central Asia

Barbolini, N. ; Woutersen, A. ; Dupont-Nivet, G. ; Silvestro, Daniele ; Tardif, D. ; Coster, P. M. C. ; Meijer, N. ; Chang, C. ; Zhang, H.-X. ; Licht, A. ; Rydin, C. ; Koutsodendris, A. ; Han, F. ; Rohrmann, A. ; Liu, X.-J. ; Zhang, Y. ; Donnadieu, Y. ; Fluteau, F. ; Ladant, J.-B. ; Le Hir, G. ; Hoorn, C.

In: Science Advances, 2020, vol. 6, no. 41, p. eabb8227

The origins and development of the arid and highly seasonal steppe-desert biome in Central Asia, the largest of its kind in the world, remain largely unconstrained by existing records. It is unclear how Cenozoic climatic, geological, and biological forces, acting at diverse spatial and temporal scales, shaped Central Asian ecosystems through time. Our synthesis shows that the Central Asian...

Université de Fribourg

Shining a light on species delimitation in the tree genus Engelhardia Leschenault ex Blume (Juglandaceae)

Zhang, Can-Yu ; Low, Shook Ling ; Song, Yi-Gang ; Nuraina ; Kozlowski, Gregor ; Do, Truong Van ; Li, Lang ; Zhou, Shi-Shun ; Tan, Yun-Hong ; Cao, Guan-Long ; Zhou, Zhuo ; Meng, Hong-Hu ; Li, Jie

In: Molecular Phylogenetics and Evolution, 2020, vol. 152, p. 106918

Enhanced efficacy in species delimitation is critically important in biology given the pending biodiversity crisis under global warming and anthropogenic activity. In particular, delineation of traditional classifications in view of the complexity of species requires an integrative approach to effectively define species boundaries, and this is a major focus of systematic biology. Here, we...

Università della Svizzera italiana

Warm bodies in the Chinese borderlands : architecture, thermal infrastructure, and territorialization in the arid continental climate of Ürümchi, Xinjiang

Kobi, Madlen

In: Eurasian geography and economics, 2020, vol. 61, no. 1, p. 77-99

Architectural research often considers buildings and settlement practices as local material adaptations to climate, particularly when it comes to the analysis of architecture in rural and small-scale settlements. Based on ethnographic data from the rapidly urbanizing oasis metropolis Ürümchi in China’s northwestern borderlands, this paper goes beyond such a localized view of climate ...