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Université de Fribourg

The essence of yeast quiescence

De Virgilio, Claudio

In: FEMS Microbiology Reviews, 2012, vol. 36, no. 2, p. 306-339

Like all microorganisms, yeast cells spend most of their natural lifetime in a reversible, quiescent state that is primarily induced by limitation for essential nutrients. Substantial progress has been made in defining the features of quiescent cells and the nutrient-signaling pathways that shape these features. A view that emerges from the wealth of new data is that yeast cells dynamically...

Université de Fribourg

Mitochondrial genomic dysfunction causes dephosphorylation of SCH9 in the yeast Saccharomyces cerevisiae

Kawai, Shigeyuki ; Urban, Jörg ; Piccolis, Manuele ; Panchaud, Nicolas ; De Virgilio, Claudio ; Loewith, Robbie

In: Eukaryotic Cell, 2011, vol. 10, no. 10, p. 1367-1369

TORC1-dependent phosphorylation of Saccharomyces cerevisiae Sch9 was dramatically reduced upon exposure to a protonophore or in respiration-incompetent ρ⁰ cells but not in respiration-incompetent pet mutants, providing important insight into the molecular mechanisms governing interorganellar signaling in general and retrograde signaling in particular

Université de Fribourg

Initiation of the TORC1-regulated G0 program requires Igo1/2, which license specific mRNAs to evade degradation via the 5'-3' mRNA decay pathway

Talarek, Nicolas ; Cameroni, Elisabetta ; Jaquenoud, Malika ; Luo, Xuan ; Bontron, Séverine ; Lippman, Soyeon ; Devgan, Geeta ; Snyder, Michael ; Broach, James R. ; De Virgilio, Claudio

In: Molecular Cell, 2010, vol. 38, no. 3, p. 345-355

Eukaryotic cell proliferation is controlled by growth factors and essential nutrients, in the absence of which cells may enter into a quiescent (G0) state. In yeast, nitrogen and/or carbon limitation causes downregulation of the conserved TORC1 and PKA signaling pathways and, consequently, activation of the PAS kinase Rim15, which orchestrates G0 program initiation and ensures proper life span by...

Université de Fribourg

Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs

Mok, Janine ; Kim, Philip M. ; Lam, Hugo Y. K. ; Piccirillo, Stacy ; Zhou, Xiuqiong ; Jeschke, Grace R. ; Sheridan, Douglas L. ; Parker, Sirlester A. ; Desai, Ved ; Jwa, Miri ; Cameroni, Elisabetta ; Niu, Hengyao ; Good, Matthew ; Remenyi, Attila ; Ma, Jia-Lin Nianhan ; Sheu, Yi-Jun ; Sassi, Holly E. ; Sopko, Richelle ; Chan, Clarence S. M. ; De Virgilio, Claudio ; Hollingsworth, Nancy M. ; Lim, Wendell A. ; Stern, David F. ; Stillman, Bruce ; Andrews, Brenda J. ; Gerstein, Mark B. ; Snyder, Michael ; Turk, Benjamin E.

In: Science Signaling, 2010, vol. 3, no. 109, p. ra12

Phosphorylation is a universal mechanism for regulating cell behavior in eukaryotes. Although protein kinases target short linear sequence motifs on their substrates, the rules for kinase substrate recognition are not completely understood. We used a rapid peptide screening approach to determine consensus phosphorylation site motifs targeted by 61 of the 122 kinases in Saccharomyces cerevisiae....

Université de Fribourg

Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae

Smets, Bart ; Ghillebert, Ruben ; Snijder, Pepijn De ; Binda, Matteo ; Swinnen, Erwin ; De Virgilio, Claudio ; Winderickx, Joris

In: Current Genetics, 2010, vol. 56, no. 1, p. 1-32

Cells of all living organisms contain complex signal transduction networks to ensure that a wide range of physiological properties are properly adapted to the environmental conditions. The fundamental concepts and individual building blocks of these signalling networks are generally well-conserved from yeast to man; yet, the central role that growth factors and hormones play in the regulation of...

Université de Fribourg

The Vam6 GEF controls TORC1 by activating the EGO complex

Binda, Matteo ; Péli-Gulli, Marie-Pierre ; Bonfils, Grégory ; Panchaud, Nicolas ; Urban, Jörg ; Sturgill, Thomas W. ; Loewith, Robbie ; De Virgilio, Claudio

In: Molecular Cell, 2009, vol. 35, no. 5, p. 563-573

The target of rapamycin complex 1 (TORC1) is a central regulator of eukaryotic cell growth that is activated by a variety of hormones (e.g., insulin) and nutrients (e.g., amino acids) and is deregulated in various cancers. Here, we report that the yeast Rag GTPase homolog Gtr1, a component of the vacuolar-membrane-associated EGO complex (EGOC), interacts with and activates TORC1 in an...

Université de Fribourg

Control of cellular physiology by TM9 proteins in yeast and Dictyostelium

Froquet, Romain ; Cherix, Nathalie ; Birke, Raphael ; Benghezal, Mohammed ; Cameroni, Elisabetta ; Letourneur, François ; Mösch, Hans-Ulrich ; De Virgilio, Claudio ; Cosson, Pierre

In: Journal of Biological Chemistry, 2008, vol. 283, no. 11, p. 6764-6772

TM9 proteins constitute a well defined family, characterized by the presence of a large variable extracellular domain and nine putative transmembrane domains. This family is highly conserved throughout evolution and comprises three members in Dictyostelium discoideum and Saccharomyces cerevisiae and four in humans and mice. In Dictyostelium, previous analysis demonstrated...

Université de Fribourg

Caffeine extends yeast lifespan by targeting TORC1

Wanke, Valeria ; Cameroni, Elisabetta ; Uotila, Aino ; Piccolis, Manuele ; Urban, Jörg ; Loewith, Robbie ; De Virgilio, Claudio

In: Molecular Microbiology, 2008, vol. 69, no. 1, p. 277 - 285

Dietary nutrient limitation (dietary restriction) is known to increase lifespan in a variety of organisms. Although the molecular events that couple dietary restriction to increased lifespan are not clear, studies of the model eukaryote Saccharomyces cerevisiae have implicated several nutrient-sensitive kinases, including the target of rapamycin complex 1 (TORC1), Sch9, protein kinase A (PKA) and...

Université de Fribourg

The evolutionary conserved BER1 gene is involved in microtubule stability in yeast

Fiechter, Vincent ; Cameroni, Elisabetta ; Cerutti, Lorenzo ; De Virgilio, Claudio ; Barral, Yves ; Fankhauser, Christian

In: Current Genetics, 2008, vol. 53, no. 2, p. 107-115

In yeast, microtubules are dynamic filaments necessary for spindle and nucleus positioning, as well as for proper chromosome segregation. We identify a function for the yeast gene BER1 (Benomyl REsistant 1) in microtubule stability. BER1 belongs to an evolutionary conserved gene family whose founding member Sensitivity to Red light Reduced is involved in red-light perception and...

Université de Fribourg

Membrane stress is coupled to a rapid translational control of gene expression in chlorpromazine-treated cells

Filippi, Loic De ; Fournier, Margot ; Cameroni, Elisabetta ; Linder, Patrick ; De Virgilio, Claudio ; Foti, Michelangelo ; Deloche, Olivier

In: Current Genetics, 2007, vol. 52, no. 3-4, p. 171-185

Chlorpromazine (CPZ) is a small permeable cationic amphiphilic molecule that inserts into membrane bilayers and binds to anionic lipids such as poly-phosphoinositides (PIs). Since PIs play important roles in many cellular processes, including signaling and membrane trafficking pathways, it has been proposed that CPZ affects cellular growth functions by preventing the recruitment of proteins with...