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Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance

Montazeri, Hesam ; Montazeri, Hesam ; Günthard, Huldrych F. ; Yang, Wan-Lin ; Kouyos, Roger ; Beerenwinkel, Niko ; Montazeri, Hesam ; Günthard, Huldrych F. ; Yang, Wan-Lin ; Kouyos, Roger ; Beerenwinkel, Niko

In: Biostatistics, 2015, vol. 16, no. 4, p. 713-726

Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database

Altmann, André ; Däumer, Martin ; Beerenwinkel, Niko ; Peres, Yardena ; Schülter, Eugen ; Büch, Joachim ; Rhee, Soo-Yon ; Sönnerborg, Anders ; Fessel, W. Jeffrey ; Shafer, Robert W. ; Zazzi, Maurizio ; Kaiser, Rolf ; Lengauer, Thomas

In: The Journal of Infectious Diseases, 2009, vol. 199, no. 7, p. 999-1006

Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction

Dümcke, Sebastian ; Bräuer, Johannes ; Anchang, Benedict ; Spang, Rainer ; Beerenwinkel, Niko ; Tresch, Achim

In: Bioinformatics, 2014, vol. 30, no. 3, p. 414-419

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

In: Nucleic Acids Research, 2014, vol. 42, no. 14, p. e115-e115

Efficient sampling for Bayesian inference of conjunctive Bayesian networks

Sakoparnig, Thomas ; Beerenwinkel, Niko

In: Bioinformatics, 2012, vol. 28, no. 18, p. 2318-2324

Stability of gene rankings from RNAi screens

Siebourg, Juliane ; Merdes, Gunter ; Misselwitz, Benjamin ; Hardt, Wolf-Dietrich ; Beerenwinkel, Niko

In: Bioinformatics, 2012, vol. 28, no. 12, p. 1612-1618

Quantifying cancer progression with conjunctive Bayesian networks

Gerstung, Moritz ; Baudis, Michael ; Moch, Holger ; Beerenwinkel, Niko

In: Bioinformatics, 2009, vol. 25, no. 21, p. 2809-2815

ISMB/ECCB 2015

Moreau, Yves ; Beerenwinkel, Niko

In: Bioinformatics, 2015, vol. 31, no. 12, p. i1-i2

Learning Monotonic Genotype-Phenotype Maps

Beerenwinkel, Niko ; Knupfer, Patrick ; Tresch, Achim

In: Statistical Applications in Genetics and Molecular Biology, 2011, vol. 10, no. 1, p. -

Covering Pairs in Directed Acyclic Graphs†

Beerenwinkel, Niko ; Beretta, Stefano ; Bonizzoni, Paola ; Dondi, Riccardo ; Pirola, Yuri

In: The Computer Journal, 2015, vol. 58, no. 7, p. 1673-1686